STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RpsKKEGG: apb:SAR116_2414 5.7e-39 30S ribosomal protein S11 K02948; Psort location: Cytoplasmic, score: 9.67. (132 aa)    
Predicted Functional Partners:
RpmE
Ribosomal protein L31; KEGG: apb:SAR116_2278 2.6e-11 50S ribosomal protein L31 K02909; Psort location: Cytoplasmic, score: 9.67.
  
 
 0.999
KXA17226.1
KEGG: mct:MCR_1603 8.9e-18 rplY; 50S ribosomal protein L25 K02897; Psort location: Cytoplasmic, score: 7.50.
  
 
 0.999
KXA17212.1
Ribosome biogenesis GTPase Era; KEGG: reh:H16_A2554 4.6e-37 era; GTP-binding protein Era K03595; Psort location: CytoplasmicMembrane, score: 8.78.
  
 0.999
RpsA
KEGG: bde:BDP_0900 1.0e-238 rpsA; 30S ribosomal protein S1 K02945; Psort location: Cytoplasmic, score: 9.97.
  
 0.999
KXA16970.1
KEGG: gvg:HMPREF0421_20524 0. hrpA; ATP-dependent helicase HrpA; K03578 ATP-dependent helicase HrpA; Psort location: Cytoplasmic, score: 7.50.
    
 0.999
RpsG
Ribosomal protein S7; KEGG: apb:SAR116_2387 2.0e-45 30S ribosomal protein S7 K02992.
  
 0.999
RpsL
Ribosomal protein S12; KEGG: apb:SAR116_2386 2.0e-45 30S ribosomal protein S12 K02950; Psort location: Cytoplasmic, score: 9.97.
  
 0.999
KXA17048.1
DEAD/DEAH box helicase; KEGG: gvg:HMPREF0421_20422 3.3e-256 ppx; exopolyphosphatase; Psort location: Cytoplasmic, score: 9.97.
  
 0.999
RpmI
Ribosomal protein L35.
  
 
 0.999
RplT
Ribosomal protein L20; KEGG: apb:SAR116_1231 1.7e-23 50S ribosomal protein L20 K02887; Psort location: Cytoplasmic, score: 9.97.
  
 
 0.999
Your Current Organism:
Gardnerella vaginalis
NCBI taxonomy Id: 2702
Other names: ATCC 14018, CCUG 3717, CIP 70.74, Corynebacterium vaginale, DSM 4944, G. vaginalis, Haemophilus hemolyticus vaginalis, Haemophilus vaginalis, JCM 11026, LMG 7832, LMG:7832, NCTC 10287, NCTC 10915, strain 594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.