STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KXA15712.1KEGG: gvg:HMPREF0421_21255 1.3e-135 truA; tRNA-pseudouridine synthase I K06173; Psort location: Cytoplasmic, score: 7.50. (303 aa)    
Predicted Functional Partners:
RpoA
KEGG: gvh:HMPREF9231_0263 6.9e-169 rpoA; DNA-directed RNA polymerase subunit alpha K03040; Psort location: Cytoplasmic, score: 9.97.
  
  
 0.999
RplQ
Ribosomal protein L17; KEGG: apb:SAR116_2416 1.9e-22 50S ribosomal protein L17 K02879; Psort location: Cytoplasmic, score: 9.67.
 
  
 0.999
KXA15717.1
KEGG: gvh:HMPREF9231_1209 2.3e-154 truB; tRNA pseudouridine synthase B K03177; Psort location: Cytoplasmic, score: 9.97.
 
 
 0.892
KXA17041.1
KEGG: gvh:HMPREF9231_1125 2.7e-112 putative tRNA (guanine-N(7)-)-methyltransferase; K03439 tRNA (guanine-N7-)-methyltransferase; Psort location: Cytoplasmic, score: 7.50.
  
 
 0.827
RpsK
KEGG: apb:SAR116_2414 5.7e-39 30S ribosomal protein S11 K02948; Psort location: Cytoplasmic, score: 9.67.
  
 
 0.817
KXA15693.1
KEGG: apb:SAR116_2400 7.9e-10 30S ribosomal protein S17 K02961; Psort location: Cytoplasmic, score: 9.97.
 
 0.814
KXA15704.1
Adenylate kinase; KEGG: gvh:HMPREF9231_0258 1.0e-87 adk; adenylate kinase K00939; Psort location: Cytoplasmic, score: 9.97.
  
  
 0.777
RpsI
Ribosomal protein S9; KEGG: apb:SAR116_0492 2.7e-25 30S ribosomal protein S9 K02996; Psort location: Cytoplasmic, score: 9.97.
  
  
 0.772
KXA15680.1
Ribosomal protein L13; KEGG: apb:SAR116_0493 9.2e-32 50S ribosomal protein L13 K02871; Psort location: Cytoplasmic, score: 7.50.
  
  
 0.771
KXA15705.1
KEGG: bcz:BCZK0127 9.0e-25 infA; translation initiation factor IF-1 K02518; Psort location: Cytoplasmic, score: 9.97.
  
  
 0.770
Your Current Organism:
Gardnerella vaginalis
NCBI taxonomy Id: 2702
Other names: ATCC 14018, CCUG 3717, CIP 70.74, Corynebacterium vaginale, DSM 4944, G. vaginalis, Haemophilus hemolyticus vaginalis, Haemophilus vaginalis, JCM 11026, LMG 7832, LMG:7832, NCTC 10287, NCTC 10915, strain 594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.