STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KXA15717.1KEGG: gvh:HMPREF9231_1209 2.3e-154 truB; tRNA pseudouridine synthase B K03177; Psort location: Cytoplasmic, score: 9.97. (407 aa)    
Predicted Functional Partners:
KXA17057.1
KEGG: gvh:HMPREF9231_0973 3.1e-276 GMP synthase; K01951 GMP synthase (glutamine-hydrolysing); Psort location: Cytoplasmic, score: 7.50.
  
  
 0.999
KXA15715.1
KEGG: bbp:BBPR_1522 0. infB; protein translation initiation factor 2 (IF-2) InfB K02519; Psort location: Cytoplasmic, score: 9.67.
 
 0.996
KXA15716.1
Ribosome-binding factor A; KEGG: aly:ARALYDRAFT_353351 8.0e-06 hypothetical protein; K00764 amidophosphoribosyltransferase; Psort location: Cytoplasmic, score: 9.97.
  
  
 0.991
KXA15718.1
Riboflavin kinase; KEGG: gvg:HMPREF0421_20346 6.3e-191 ribF; riboflavin kinase/FMN adenylyltransferase K11753; Psort location: Cytoplasmic, score: 7.50.
 
  
 0.965
KXA17252.1
Hypothetical protein; KEGG: bde:BDP_0628 9.8e-170 helicase.
  
 
 0.922
KXA16091.1
Guanosine pentaphosphate synthetase I/polyribonucleotide nucleotidyltransferase; KEGG: gvg:HMPREF0421_20335 0. pnp; polyribonucleotide nucleotidyltransferase K00962; Psort location: Cytoplasmic, score: 9.97.
  
 0.902
KXA16089.1
Ribosomal protein S15; KEGG: apb:SAR116_1577 1.1e-19 30S ribosomal protein S15 K02956; Psort location: Cytoplasmic, score: 9.67.
  
 0.900
KXA15135.1
Ribosome biogenesis GTPase Der; KEGG: bbp:BBPR_1002 5.1e-292 GTP-binding protein K03977; Psort location: Cytoplasmic, score: 9.95.
 
  
 0.894
KXA15712.1
KEGG: gvg:HMPREF0421_21255 1.3e-135 truA; tRNA-pseudouridine synthase I K06173; Psort location: Cytoplasmic, score: 7.50.
 
 
 0.892
GuaB
KEGG: gvh:HMPREF9231_0628 3.5e-268 guaB; inosine-5'-monophosphate dehydrogenase K00088; Psort location: Cytoplasmic, score: 7.50.
  
 
 0.876
Your Current Organism:
Gardnerella vaginalis
NCBI taxonomy Id: 2702
Other names: ATCC 14018, CCUG 3717, CIP 70.74, Corynebacterium vaginale, DSM 4944, G. vaginalis, Haemophilus hemolyticus vaginalis, Haemophilus vaginalis, JCM 11026, LMG 7832, LMG:7832, NCTC 10287, NCTC 10915, strain 594
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