STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RpiAKEGG: gvh:HMPREF9231_1170 1.5e-118 rpiA; ribose 5-phosphate isomerase A K01807; Psort location: Cytoplasmic, score: 7.50. (232 aa)    
Predicted Functional Partners:
Pgm
KEGG: gva:HMPREF0424_0298 3.9e-301 pgm; phosphoglucomutase, alpha-D-glucose phosphate-specific K01835; Psort location: Cytoplasmic, score: 7.50.
  
 
 0.965
Tkt
Transketolase; KEGG: gvg:HMPREF0421_20791 0. tkt; transketolase K00615; Psort location: Cytoplasmic, score: 7.50.
   
 0.961
KXA17466.1
Shikimate kinase; KEGG: gvh:HMPREF9231_1260 1.1e-88 putative gluconokinase; K00851 gluconokinase; Psort location: CytoplasmicMembrane, score: 8.16.
    
 0.943
Prs
KEGG: gvh:HMPREF9231_0708 4.8e-177 prs_2; ribose-phosphate diphosphokinase K00948; Psort location: Cytoplasmic, score: 9.97.
  
 
 0.932
Gnd
KEGG: gvg:HMPREF0421_21329 2.7e-254 gnd2; phosphogluconate dehydrogenase K00033; Psort location: Cytoplasmic, score: 7.50.
  
 
 0.931
KXA15730.1
Ribonuclease HI; KEGG: gvh:HMPREF9231_1169 8.8e-153 rnhA; ribonuclease HI K03469.
     
 0.843
KXA15215.1
KEGG: gvh:HMPREF9231_0652 1.0e-158 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1; K06215 pyridoxine biosynthesis protein; Psort location: Cytoplasmic, score: 7.50.
    
  0.812
KXA17057.1
KEGG: gvh:HMPREF9231_0973 3.1e-276 GMP synthase; K01951 GMP synthase (glutamine-hydrolysing); Psort location: Cytoplasmic, score: 7.50.
  
 
 0.742
KXA15317.1
KEGG: gvg:HMPREF0421_20813 7.1e-112 rpe; ribulose-phosphate 3-epimerase K01783; Psort location: Cytoplasmic, score: 7.50.
  
 
 0.696
KXA17468.1
KEGG: gvg:HMPREF0421_20299 2.0e-153 gnd; 6-phosphogluconate dehydrogenase K00033; Psort location: Cytoplasmic, score: 7.50.
    
 0.686
Your Current Organism:
Gardnerella vaginalis
NCBI taxonomy Id: 2702
Other names: ATCC 14018, CCUG 3717, CIP 70.74, Corynebacterium vaginale, DSM 4944, G. vaginalis, Haemophilus hemolyticus vaginalis, Haemophilus vaginalis, JCM 11026, LMG 7832, LMG:7832, NCTC 10287, NCTC 10915, strain 594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.