STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KXA15617.1Signal peptidase I; KEGG: gvh:HMPREF9231_0320 1.2e-123 lepB; signal peptidase I K03100; Psort location: CytoplasmicMembrane, score: 9.51. (317 aa)    
Predicted Functional Partners:
RplS
Ribosomal protein L19; KEGG: scp:HMPREF0833_10394 3.2e-29 argB; acetylglutamate kinase K02884; Psort location: Cytoplasmic, score: 9.97.
  
    0.881
KXA15618.1
Ribonuclease HII; KEGG: gvg:HMPREF0421_21216 1.6e-98 rnhB; ribonuclease HII K03470.
  
  
 0.872
LepA
KEGG: bde:BDP_1076 1.1e-280 lepA; GTP-binding protein LepA K03596; Psort location: CytoplasmicMembrane, score: 8.78.
  
  
 0.625
Pgi
KEGG: gvh:HMPREF9231_0314 0. glucose-6-phosphate isomerase K01810; Psort location: Cytoplasmic, score: 9.67.
     
 0.599
KXA16378.1
KEGG: apb:SAR116_1818 3.8e-07 16S rRNA processing protein K02860; Psort location: Cytoplasmic, score: 7.50.
 
    0.557
KXA17596.1
KEGG: apb:SAR116_0550 0.00029 ribosomal subunit interface protein; Psort location: Cytoplasmic, score: 7.50.
 
    0.505
KXA16382.1
KEGG: shn:Shewana3_3018 3.2e-100 signal recognition particle protein K03106; Psort location: CytoplasmicMembrane, score: 9.51.
     
 0.493
KXA16377.1
KEGG: gvh:HMPREF9231_0393 1.2e-132 trmD; tRNA (guanine-N(1)-)-methyltransferase; K00554 tRNA (guanine37-N1)-methyltransferase; Psort location: Cytoplasmic, score: 7.50.
  
    0.480
KXA16995.1
DNA repair protein RecO.
 
     0.467
KXA17069.1
DNA protecting protein DprA; KEGG: hip:CGSHiEE_07040 2.7e-30 2-isopropylmalate synthase K04096.
 
     0.444
Your Current Organism:
Gardnerella vaginalis
NCBI taxonomy Id: 2702
Other names: ATCC 14018, CCUG 3717, CIP 70.74, Corynebacterium vaginale, DSM 4944, G. vaginalis, Haemophilus hemolyticus vaginalis, Haemophilus vaginalis, JCM 11026, LMG 7832, LMG:7832, NCTC 10287, NCTC 10915, strain 594
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