STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KXA15618.1Ribonuclease HII; KEGG: gvg:HMPREF0421_21216 1.6e-98 rnhB; ribonuclease HII K03470. (227 aa)    
Predicted Functional Partners:
KXA15926.1
DNA polymerase III, beta subunit; KEGG: gvh:HMPREF9231_0002 9.1e-183 dnaN; DNA polymerase III subunit beta K02338; Psort location: Cytoplasmic, score: 9.67.
 
 
 0.919
RplS
Ribosomal protein L19; KEGG: scp:HMPREF0833_10394 3.2e-29 argB; acetylglutamate kinase K02884; Psort location: Cytoplasmic, score: 9.97.
 
   
 0.887
KXA15617.1
Signal peptidase I; KEGG: gvh:HMPREF9231_0320 1.2e-123 lepB; signal peptidase I K03100; Psort location: CytoplasmicMembrane, score: 9.51.
  
  
 0.872
KXA15730.1
Ribonuclease HI; KEGG: gvh:HMPREF9231_1169 8.8e-153 rnhA; ribonuclease HI K03469.
  
 
 0.819
KXA16377.1
KEGG: gvh:HMPREF9231_0393 1.2e-132 trmD; tRNA (guanine-N(1)-)-methyltransferase; K00554 tRNA (guanine37-N1)-methyltransferase; Psort location: Cytoplasmic, score: 7.50.
 
  
 0.803
KXA17072.1
KEGG: gvh:HMPREF9231_0991 0. polA; DNA-directed DNA polymerase K02335; Psort location: Cytoplasmic, score: 7.50.
 
 
 0.742
KXA16382.1
KEGG: shn:Shewana3_3018 3.2e-100 signal recognition particle protein K03106; Psort location: CytoplasmicMembrane, score: 9.51.
     
 0.731
KXA16645.1
KEGG: gvh:HMPREF9231_0965 0. pheT; phenylalanine--tRNA ligase, beta subunit K01890; Psort location: Cytoplasmic, score: 9.97.
 
     0.730
KXA15135.1
Ribosome biogenesis GTPase Der; KEGG: bbp:BBPR_1002 5.1e-292 GTP-binding protein K03977; Psort location: Cytoplasmic, score: 9.95.
  
    0.719
KXA15154.1
RecA protein; KEGG: jde:Jden_1041 1.7e-135 recA protein K03553; Psort location: Cytoplasmic, score: 9.97.
  
 
 0.709
Your Current Organism:
Gardnerella vaginalis
NCBI taxonomy Id: 2702
Other names: ATCC 14018, CCUG 3717, CIP 70.74, Corynebacterium vaginale, DSM 4944, G. vaginalis, Haemophilus hemolyticus vaginalis, Haemophilus vaginalis, JCM 11026, LMG 7832, LMG:7832, NCTC 10287, NCTC 10915, strain 594
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