STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KXA15429.1Hypothetical protein; KEGG: rdn:HMPREF0733_10151 2.5e-29 MarR family transcriptional regulator; Psort location: Cytoplasmic, score: 7.50. (122 aa)    
Predicted Functional Partners:
KXA16442.1
Putative ribokinase; KEGG: gvh:HMPREF9231_0377 2.1e-160 putative ribokinase; K00852 ribokinase; Psort location: Cytoplasmic, score: 9.67.
      0.818
KXA17243.1
SsrA-binding protein; KEGG: apb:SAR116_0541 4.2e-27 SmpB protein K03664; Psort location: Cytoplasmic, score: 7.50.
  
    0.692
KXA17245.1
Efflux ABC transporter, permease protein; KEGG: ase:ACPL_1080 4.1e-29 Macrolide export ATP-binding/permease protein macB K09811; Psort location: CytoplasmicMembrane, score: 10.00.
       0.639
KXA17246.1
KEGG: bde:BDP_0641 2.4e-127 ftsE; cell division ATP-binding protein ftsE K09812; Psort location: CytoplasmicMembrane, score: 9.96.
       0.639
PrfB
KEGG: rha:RHA1_ro06404 3.7e-115 prfB; peptide chain release factor 2 K02836; Psort location: Cytoplasmic, score: 9.97.
       0.639
KXA17606.1
Argininosuccinate synthase; KEGG: gvg:HMPREF0421_20588 3.6e-211 argG; argininosuccinate synthase K01940; Psort location: Cytoplasmic, score: 7.50.
       0.634
KXA15207.1
Alanine racemase; KEGG: gvg:HMPREF0421_20911 4.2e-233 alr; alanine racemase K01775; Psort location: Cytoplasmic, score: 9.97.
       0.576
Pgm
KEGG: gva:HMPREF0424_0298 3.9e-301 pgm; phosphoglucomutase, alpha-D-glucose phosphate-specific K01835; Psort location: Cytoplasmic, score: 7.50.
       0.531
KXA16811.1
KEGG: gvh:HMPREF9231_0309 1.4e-51 4'-phosphopantetheinyl transferase; K00997 holo-[acyl-carrier protein] synthase; Psort location: Cytoplasmic, score: 7.50.
       0.525
KXA17605.1
Argininosuccinate lyase; KEGG: gvh:HMPREF9231_0962 6.2e-239 argH; argininosuccinate lyase K01755; Psort location: Cytoplasmic, score: 7.50.
       0.507
Your Current Organism:
Gardnerella vaginalis
NCBI taxonomy Id: 2702
Other names: ATCC 14018, CCUG 3717, CIP 70.74, Corynebacterium vaginale, DSM 4944, G. vaginalis, Haemophilus hemolyticus vaginalis, Haemophilus vaginalis, JCM 11026, LMG 7832, LMG:7832, NCTC 10287, NCTC 10915, strain 594
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