STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KXA15435.1KEGG: gvg:HMPREF0421_20714 0. trcF; transcription-repair coupling factor K03723; Psort location: Cytoplasmic, score: 9.97. (1217 aa)    
Predicted Functional Partners:
KXA15297.1
KEGG: gvh:HMPREF9231_0770 0. uvrA; excinuclease ABC subunit A K03701; Psort location: Cytoplasmic, score: 7.50.
   
 0.983
KXA15434.1
aminoacyl-tRNA hydrolase; KEGG: gvg:HMPREF0421_20713 3.1e-102 pth; aminoacyl-tRNA hydrolase K01056; Psort location: Cytoplasmic, score: 9.67.
  
  
 0.960
RpoC
KEGG: gvg:HMPREF0421_21208 0. rpoC; DNA-directed RNA polymerase subunit beta prime K03046; Psort location: Cytoplasmic, score: 9.97.
  
 
 
 0.952
RpoB
KEGG: gvg:HMPREF0421_21209 0. rpoB; DNA-directed RNA polymerase subunit beta K03043; Psort location: Cytoplasmic, score: 9.97.
    
 
 0.946
RpoA
KEGG: gvh:HMPREF9231_0263 6.9e-169 rpoA; DNA-directed RNA polymerase subunit alpha K03040; Psort location: Cytoplasmic, score: 9.97.
 
 
 
 0.924
rpoZ
KEGG: gvg:HMPREF0421_20761 2.2e-46 rpoZ; DNA-directed RNA polymerase subunit omega K03060.
   
 
 0.897
KXA15298.1
Excinuclease ABC, C subunit; KEGG: gvg:HMPREF0421_20802 0. uvrC; excision endonuclease subunit UvrC K03703; Psort location: Cytoplasmic, score: 9.95.
 
  
 0.804
UvrB
Excinuclease ABC, B subunit; KEGG: gvg:HMPREF0421_20977 0. uvrB; excision endonuclease subunit UvrB K03702; Psort location: Cytoplasmic, score: 9.97.
    
0.789
KXA15976.1
KEGG: gvh:HMPREF9231_1326 2.1e-277 dnaX; DNA polymerase III, subunit gamma and tau K02343; Psort location: Cytoplasmic, score: 9.97.
    
 0.752
KXA15161.1
KEGG: gvh:HMPREF9231_0694 0. phosphoribosylformylglycinamidine synthase K01952; Psort location: Cytoplasmic, score: 9.97.
  
  
 0.724
Your Current Organism:
Gardnerella vaginalis
NCBI taxonomy Id: 2702
Other names: ATCC 14018, CCUG 3717, CIP 70.74, Corynebacterium vaginale, DSM 4944, G. vaginalis, Haemophilus hemolyticus vaginalis, Haemophilus vaginalis, JCM 11026, LMG 7832, LMG:7832, NCTC 10287, NCTC 10915, strain 594
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.