STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KXA15244.1Hypothetical protein; Psort location: Cytoplasmic, score: 7.50. (317 aa)    
Predicted Functional Partners:
KXA15243.1
Bacterial surface protein 26-residue PARCEL repeat-containing domain protein; KEGG: pfh:PFHG_03923 6.2e-11 hypothetical protein similar to histone acetyltransferase; K06062 histone acetyltransferase.
       0.496
Efp
KEGG: sen:SACE_2075 2.2e-62 efp; elongation factor P K02356; Psort location: Cytoplasmic, score: 9.97.
       0.488
KXA15246.1
Transcription antitermination factor NusB; KEGG: mas:Mahau_0986 2.3e-10 sun protein; K03500 16S rRNA (cytosine967-C5)-methyltransferase; Psort location: Cytoplasmic, score: 7.50.
       0.440
Your Current Organism:
Gardnerella vaginalis
NCBI taxonomy Id: 2702
Other names: ATCC 14018, CCUG 3717, CIP 70.74, Corynebacterium vaginale, DSM 4944, G. vaginalis, Haemophilus hemolyticus vaginalis, Haemophilus vaginalis, JCM 11026, LMG 7832, LMG:7832, NCTC 10287, NCTC 10915, strain 594
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