STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KXA15246.1Transcription antitermination factor NusB; KEGG: mas:Mahau_0986 2.3e-10 sun protein; K03500 16S rRNA (cytosine967-C5)-methyltransferase; Psort location: Cytoplasmic, score: 7.50. (156 aa)    
Predicted Functional Partners:
KXA15683.1
Ribosomal protein S10; KEGG: apb:SAR116_2390 6.0e-28 30S ribosomal protein S10 K02946; Psort location: Cytoplasmic, score: 9.97.
  
 0.954
Efp
KEGG: sen:SACE_2075 2.2e-62 efp; elongation factor P K02356; Psort location: Cytoplasmic, score: 9.97.
  
  
 0.932
KXA15714.1
KEGG: apb:SAR116_1582 4.1e-52 NusA antitermination factor K02600; Psort location: Cytoplasmic, score: 7.50.
  
 0.929
rpoZ
KEGG: gvg:HMPREF0421_20761 2.2e-46 rpoZ; DNA-directed RNA polymerase subunit omega K03060.
  
 0.925
KXA16341.1
Transcription termination/antitermination factor NusG; KEGG: apb:SAR116_2379 3.4e-25 transcription antiterminator K02601; Psort location: Cytoplasmic, score: 7.50.
 
 0.907
RpsD
Ribosomal protein S4; KEGG: ctu:CTU_38240 1.2e-27 rpsD; 30S ribosomal protein S4 K02986; Psort location: Cytoplasmic, score: 7.50.
   
 
 0.859
KXA15289.1
KEGG: gvg:HMPREF0421_20794 3.6e-156 fmt; methionyl-tRNA formyltransferase K00604; Psort location: Cytoplasmic, score: 9.97.
  
  
 0.825
FusA
Translation elongation factor G; KEGG: bnm:BALAC2494_00509 0. Protein-synthesizing GTPase K02355; Psort location: Cytoplasmic, score: 9.97.
  
  
 0.818
KXA16671.1
3-dehydroquinate synthase; KEGG: gvg:HMPREF0421_21086 6.5e-276 aroB; 3-dehydroquinate synthase K13829; Psort location: Cytoplasmic, score: 9.97.
  
  
 0.800
RpsL
Ribosomal protein S12; KEGG: apb:SAR116_2386 2.0e-45 30S ribosomal protein S12 K02950; Psort location: Cytoplasmic, score: 9.97.
  
  
 0.792
Your Current Organism:
Gardnerella vaginalis
NCBI taxonomy Id: 2702
Other names: ATCC 14018, CCUG 3717, CIP 70.74, Corynebacterium vaginale, DSM 4944, G. vaginalis, Haemophilus hemolyticus vaginalis, Haemophilus vaginalis, JCM 11026, LMG 7832, LMG:7832, NCTC 10287, NCTC 10915, strain 594
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.