STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KXA15254.1Hypothetical protein; KEGG: gvg:HMPREF0421_20763 0. priA; DNA replication factor Y; K04066 primosomal protein N' (replication factor Y) (superfamily II helicase). (826 aa)    
Predicted Functional Partners:
KXA15955.1
Replicative DNA helicase; KEGG: gvg:HMPREF0421_20092 5.1e-244 dnaB; replicative DNA helicase DnaB K02314; Psort location: Cytoplasmic, score: 7.50.
   
 0.999
KXA15205.1
DNA primase; KEGG: gvh:HMPREF9231_0661 0. dnaG; DNA primase K02316.
 
  
 0.999
KXA15289.1
KEGG: gvg:HMPREF0421_20794 3.6e-156 fmt; methionyl-tRNA formyltransferase K00604; Psort location: Cytoplasmic, score: 9.97.
 
    0.879
KXA15253.1
KEGG: gvh:HMPREF9231_0802 1.5e-198 metK; methionine adenosyltransferase K00789; Psort location: Cytoplasmic, score: 9.97.
       0.874
KXA16446.1
KEGG: shn:Shewana3_3590 1.5e-10 single-strand binding protein K03111.
 
 
 0.871
KXA15257.1
Hypothetical protein; Psort location: Cytoplasmic, score: 7.50.
 
     0.870
rpoZ
KEGG: gvg:HMPREF0421_20761 2.2e-46 rpoZ; DNA-directed RNA polymerase subunit omega K03060.
 
     0.848
KXA17250.1
Single-strand binding family protein.
   
 0.830
KXA15256.1
Hypothetical protein; KEGG: apb:SAR116_1265 2.1e-39 P-loop-containing kinase K06958; Psort location: Cytoplasmic, score: 7.50.
       0.819
KXA15271.1
KEGG: gva:HMPREF0424_0874 0. nucleoside triphosphatase, D5 family; Psort location: CytoplasmicMembrane, score: 9.55.
   
 0.771
Your Current Organism:
Gardnerella vaginalis
NCBI taxonomy Id: 2702
Other names: ATCC 14018, CCUG 3717, CIP 70.74, Corynebacterium vaginale, DSM 4944, G. vaginalis, Haemophilus hemolyticus vaginalis, Haemophilus vaginalis, JCM 11026, LMG 7832, LMG:7832, NCTC 10287, NCTC 10915, strain 594
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