STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SecGPreprotein translocase, SecG subunit; Psort location: CytoplasmicMembrane, score: 9.55. (58 aa)    
Predicted Functional Partners:
KXA15703.1
KEGG: apb:SAR116_2411 2.0e-82 preprotein translocase subunit SecY K03076; Psort location: CytoplasmicMembrane, score: 10.00.
  
 0.991
KXA17595.1
KEGG: pen:PSEEN4477 3.8e-207 secA, azi, div; preprotein translocase subunit SecA K03070; Psort location: Cytoplasmic, score: 9.97.
   
 0.989
KXA15932.1
Membrane protein insertase, YidC/Oxa1 family; Psort location: CytoplasmicMembrane, score: 10.00.
 
 0.942
KXA15257.1
Hypothetical protein; Psort location: Cytoplasmic, score: 7.50.
 
   
 0.921
KXA15952.1
Signal recognition particle-docking protein FtsY; KEGG: apb:SAR116_1814 2.5e-54 cell division protein ftsY K03110; Psort location: CytoplasmicMembrane, score: 9.99.
   
 
 0.908
KXA15260.1
Triose-phosphate isomerase; KEGG: gvg:HMPREF0421_20768 1.5e-127 tpiA; triose-phosphate isomerase K01803; Psort location: Cytoplasmic, score: 9.97.
  
  
 0.887
Gap
KEGG: gvg:HMPREF0421_21168 2.0e-185 gap; glyceraldehyde-3-phosphate dehydrogenase (phosphorylating) K00134; Psort location: Cytoplasmic, score: 9.97.
     
 0.884
KXA16310.1
Ribosomal protein L21; KEGG: apb:SAR116_1856 4.6e-14 50S ribosomal protein L21 K02888.
  
 
 0.865
KXA15680.1
Ribosomal protein L13; KEGG: apb:SAR116_0493 9.2e-32 50S ribosomal protein L13 K02871; Psort location: Cytoplasmic, score: 7.50.
  
 
 0.865
KXA15262.1
Cof-like hydrolase; KEGG: bde:BDP_1141 3.7e-67 haloacid dehalogenase K07024; Psort location: Cytoplasmic, score: 7.50.
  
    0.857
Your Current Organism:
Gardnerella vaginalis
NCBI taxonomy Id: 2702
Other names: ATCC 14018, CCUG 3717, CIP 70.74, Corynebacterium vaginale, DSM 4944, G. vaginalis, Haemophilus hemolyticus vaginalis, Haemophilus vaginalis, JCM 11026, LMG 7832, LMG:7832, NCTC 10287, NCTC 10915, strain 594
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