STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KXA15271.1KEGG: gva:HMPREF0424_0874 0. nucleoside triphosphatase, D5 family; Psort location: CytoplasmicMembrane, score: 9.55. (774 aa)    
Predicted Functional Partners:
KXA15205.1
DNA primase; KEGG: gvh:HMPREF9231_0661 0. dnaG; DNA primase K02316.
 
 0.952
KXA15270.1
Phage capsid family protein; Psort location: Cytoplasmic, score: 7.50.
 
   
 0.790
KXA15928.1
KEGG: pmj:P9211_05681 2.1e-71 dnaA; chromosomal replication initiation protein K02313; Psort location: Cytoplasmic, score: 9.97.
   
 0.777
KXA15272.1
Hypothetical protein.
       0.773
KXA15254.1
Hypothetical protein; KEGG: gvg:HMPREF0421_20763 0. priA; DNA replication factor Y; K04066 primosomal protein N' (replication factor Y) (superfamily II helicase).
   
 0.771
KXA15268.1
TnpX site-specific recombinase family protein.
 
   
 0.694
KXA16645.1
KEGG: gvh:HMPREF9231_0965 0. pheT; phenylalanine--tRNA ligase, beta subunit K01890; Psort location: Cytoplasmic, score: 9.97.
     
 0.685
Tuf
KEGG: blc:Balac_0620 5.2e-203 elongation factor Tu K02358; Psort location: Cytoplasmic, score: 9.97.
   
 
 0.672
KXA15273.1
Hypothetical protein; KEGG: ral:Rumal_2514 2.4e-05 XRE family transcriptional regulator K00558; Psort location: Cytoplasmic, score: 7.50.
 
     0.658
KXA16201.1
KEGG: gvh:HMPREF9231_1282 1.2e-185 putative DNA polymerase III, delta' subunit; K02341 DNA polymerase III subunit delta'; Psort location: Cytoplasmic, score: 9.97.
   
 0.655
Your Current Organism:
Gardnerella vaginalis
NCBI taxonomy Id: 2702
Other names: ATCC 14018, CCUG 3717, CIP 70.74, Corynebacterium vaginale, DSM 4944, G. vaginalis, Haemophilus hemolyticus vaginalis, Haemophilus vaginalis, JCM 11026, LMG 7832, LMG:7832, NCTC 10287, NCTC 10915, strain 594
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.