STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KXA15287.1Transcription repressor HrcA; KEGG: apb:SAR116_1619 9.4e-30 transcriptional regulator of heat shock gene K03705; Psort location: Cytoplasmic, score: 7.50. (338 aa)    
Predicted Functional Partners:
KXA15288.1
KEGG: apb:SAR116_1614 6.9e-50 DnaJ family molecular chaperone K03686; Psort location: Cytoplasmic, score: 9.97.
 
  
 0.947
DnaK
Chaperone protein DnaK; KEGG: bbp:BBPR_1798 0. dnaK; molecular chaperone DnaK K04043; Psort location: Cytoplasmic, score: 9.97.
  
  
 0.934
KXA16236.1
KEGG: rsl:RPSI07_0878 3.6e-14 grpE; Hsp 24 nucleotide exchange factor, Ribulose-phosphate 3-epimerase activity K03687; Psort location: Cytoplasmic, score: 7.50.
  
  
 0.934
KXA17217.1
RNA methyltransferase; KEGG: gvh:HMPREF9231_0612 8.9e-137 RsmE family RNA methyltransferase K09761; Psort location: Cytoplasmic, score: 7.50.
 
  
 0.887
groL
Chaperonin GroL; Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions.
  
  
 0.867
ClpB
KEGG: bde:BDP_1996 0. clpB; ATP-dependent chaperone ClpB K03695; Psort location: Cytoplasmic, score: 9.97.
 
  
 0.854
KXA16238.1
Heat shock protein HspR family protein; KEGG: pfe:PSF113_2023 0.0045 MerR family transcriptional regulator; Psort location: Cytoplasmic, score: 9.97.
  
 
 0.796
Tkt
Transketolase; KEGG: gvg:HMPREF0421_20791 0. tkt; transketolase K00615; Psort location: Cytoplasmic, score: 7.50.
  
    0.787
GroS
Chaperonin GroS; KEGG: apb:SAR116_1896 8.4e-22 chaperonin Cpn10 K04078; Psort location: Cytoplasmic, score: 9.97.
  
  
 0.786
KXA16237.1
DnaJ domain protein; KEGG: apb:SAR116_1614 1.2e-36 DnaJ family molecular chaperone K03686; Psort location: Cytoplasmic, score: 9.97.
  
  
 0.781
Your Current Organism:
Gardnerella vaginalis
NCBI taxonomy Id: 2702
Other names: ATCC 14018, CCUG 3717, CIP 70.74, Corynebacterium vaginale, DSM 4944, G. vaginalis, Haemophilus hemolyticus vaginalis, Haemophilus vaginalis, JCM 11026, LMG 7832, LMG:7832, NCTC 10287, NCTC 10915, strain 594
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