STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KXA15295.1Hypothetical protein; KEGG: gvg:HMPREF0421_20799 0. brp/Blh family beta-carotene 15,15'-monooxygenase; Psort location: CytoplasmicMembrane, score: 10.00. (742 aa)    
Predicted Functional Partners:
KXA15296.1
KEGG: gvg:HMPREF0421_20800 7.7e-273 ABC transporter ATP-binding protein; Psort location: Cytoplasmic, score: 9.97.
       0.757
KXA16814.1
Putative dTDP-4-dehydrorhamnose reductase; KEGG: gvg:HMPREF0421_20400 3.7e-257 rmlCD; bifunctional dTDP-4-keto-L-rhamnose reductase/dTDP-4-keto-6-deoxyglucose-3,5-epimerase; K00067 dTDP-4-dehydrorhamnose reductase K01790; Psort location: Cytoplasmic, score: 7.50.
     
 0.717
KXA15303.1
Tetratricopeptide repeat protein; Psort location: Cytoplasmic, score: 7.50.
  
  
 0.710
KXA15304.1
DNA ligase; KEGG: gvg:HMPREF0421_20836 0. ligA; NAD-dependent DNA ligase LigA K01972; Psort location: Cytoplasmic, score: 7.50.
       0.655
KXA15305.1
KEGG: ccm:Ccan_01720 2.5e-45 protein mrp-like protein K03593.
     
 0.585
KXA15298.1
Excinuclease ABC, C subunit; KEGG: gvg:HMPREF0421_20802 0. uvrC; excision endonuclease subunit UvrC K03703; Psort location: Cytoplasmic, score: 9.95.
     
 0.540
KXA15297.1
KEGG: gvh:HMPREF9231_0770 0. uvrA; excinuclease ABC subunit A K03701; Psort location: Cytoplasmic, score: 7.50.
       0.481
KXA15289.1
KEGG: gvg:HMPREF0421_20794 3.6e-156 fmt; methionyl-tRNA formyltransferase K00604; Psort location: Cytoplasmic, score: 9.97.
  
  
 0.455
KXA15299.1
KEGG: gvh:HMPREF9231_0768 3.4e-192 IMP dehydrogenase family protein; K00088 IMP dehydrogenase; Psort location: Cytoplasmic, score: 7.50.
       0.421
Your Current Organism:
Gardnerella vaginalis
NCBI taxonomy Id: 2702
Other names: ATCC 14018, CCUG 3717, CIP 70.74, Corynebacterium vaginale, DSM 4944, G. vaginalis, Haemophilus hemolyticus vaginalis, Haemophilus vaginalis, JCM 11026, LMG 7832, LMG:7832, NCTC 10287, NCTC 10915, strain 594
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