STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KXA15305.1KEGG: ccm:Ccan_01720 2.5e-45 protein mrp-like protein K03593. (375 aa)    
Predicted Functional Partners:
KXA15304.1
DNA ligase; KEGG: gvg:HMPREF0421_20836 0. ligA; NAD-dependent DNA ligase LigA K01972; Psort location: Cytoplasmic, score: 7.50.
       0.908
KXA17057.1
KEGG: gvh:HMPREF9231_0973 3.1e-276 GMP synthase; K01951 GMP synthase (glutamine-hydrolysing); Psort location: Cytoplasmic, score: 7.50.
   
 
 0.880
KXA16965.1
SUF system FeS assembly protein, NifU family; Psort location: Cytoplasmic, score: 7.50.
  
  
 0.851
KXA15682.1
KEGG: gvh:HMPREF9231_0240 0. adh; aldehyde-alcohol dehydrogenase 2 K04072; Psort location: Cytoplasmic, score: 9.97.
  
 
 0.833
KXA15912.1
Kinase domain protein; KEGG: gvh:HMPREF9231_0017 0. putative serine/threonine-protein kinase PrkC; K08884 serine/threonine protein kinase, bacterial; Psort location: CytoplasmicMembrane, score: 9.51.
   
 
 0.805
SufC
KEGG: bde:BDP_1033 1.0e-119 sufC; FeS assembly ATPase SufC K09013; Psort location: Cytoplasmic, score: 9.97.
  
  
 0.800
KXA15303.1
Tetratricopeptide repeat protein; Psort location: Cytoplasmic, score: 7.50.
     
 0.800
KXA16210.1
methionine--tRNA ligase; KEGG: gvg:HMPREF0421_20283 0. metG; methionine--tRNA ligase K01874; Psort location: Cytoplasmic, score: 9.97.
 
 
 0.783
KXA16966.1
KEGG: gvh:HMPREF9231_1026 1.0e-220 cysteine desulfurase, SufS family; K11717 cysteine desulfurase / selenocysteine lyase; Psort location: Cytoplasmic, score: 9.67.
  
  
 0.778
KXA17151.1
KEGG: gvg:HMPREF0421_21032 1.1e-145 cysE; serine O-acetyltransferase K00640; Psort location: Cytoplasmic, score: 9.97.
  
  
 0.764
Your Current Organism:
Gardnerella vaginalis
NCBI taxonomy Id: 2702
Other names: ATCC 14018, CCUG 3717, CIP 70.74, Corynebacterium vaginale, DSM 4944, G. vaginalis, Haemophilus hemolyticus vaginalis, Haemophilus vaginalis, JCM 11026, LMG 7832, LMG:7832, NCTC 10287, NCTC 10915, strain 594
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