STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KXA15306.1Hypothetical protein; KEGG: tgo:TGME49_042790 1.5e-09 trichohyalin, putative; Psort location: Cytoplasmic, score: 7.50. (455 aa)    
Predicted Functional Partners:
KXA15307.1
histidine--tRNA ligase; KEGG: gvg:HMPREF0421_20833 1.3e-229 hisS; histidine--tRNA ligase K01892; Psort location: Cytoplasmic, score: 10.00.
  
  
 0.864
AspS
aspartate--tRNA ligase; KEGG: gvg:HMPREF0421_20832 0. aspS; aspartate--tRNA ligase K01876; Psort location: Cytoplasmic, score: 10.00.
  
    0.805
KXA15529.1
Hypothetical protein; Psort location: Cytoplasmic, score: 7.50.
  
     0.764
KXA15325.1
Hypothetical protein; Psort location: Cytoplasmic, score: 7.50.
  
     0.763
KXA15133.1
Putative replication-associated recombination protein A; KEGG: bde:BDP_0795 5.3e-194 ATPase AAA K07478.
  
 
 0.739
KXA15323.1
Hypothetical protein; Psort location: Cytoplasmic, score: 7.50.
 
   
 0.735
rpoZ
KEGG: gvg:HMPREF0421_20761 2.2e-46 rpoZ; DNA-directed RNA polymerase subunit omega K03060.
 
   
 0.727
KXA16642.1
Hypothetical protein; Psort location: Cytoplasmic, score: 7.50.
  
     0.717
KXA16649.1
KEGG: gvh:HMPREF9231_0969 8.6e-155 miaA; tRNA dimethylallyltransferase K00791; Psort location: Cytoplasmic, score: 7.50.
   
 
 0.698
RpsD
Ribosomal protein S4; KEGG: ctu:CTU_38240 1.2e-27 rpsD; 30S ribosomal protein S4 K02986; Psort location: Cytoplasmic, score: 7.50.
   
 
 0.693
Your Current Organism:
Gardnerella vaginalis
NCBI taxonomy Id: 2702
Other names: ATCC 14018, CCUG 3717, CIP 70.74, Corynebacterium vaginale, DSM 4944, G. vaginalis, Haemophilus hemolyticus vaginalis, Haemophilus vaginalis, JCM 11026, LMG 7832, LMG:7832, NCTC 10287, NCTC 10915, strain 594
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.