STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KXA15310.1KEGG: cfu:CFU_2615 2.5e-22 ABC transporter substrate-binding protein K02030. (263 aa)    
Predicted Functional Partners:
KXA15311.1
ABC transporter, permease protein; KEGG: apb:SAR116_1445 1.1e-19 polar amino acid uptake family ABC transporter permease K02029; Psort location: CytoplasmicMembrane, score: 10.00.
 0.999
KXA15312.1
ABC transporter, permease protein; KEGG: llm:llmg_1942 9.3e-25 glnP; glutamine ABC transporter permease and substrate binding protein K02029:K02030; Psort location: CytoplasmicMembrane, score: 10.00.
 
 0.998
KXA15309.1
KEGG: gvg:HMPREF0421_20831 2.0e-130 ABC transporter ATP-binding protein K10008; Psort location: CytoplasmicMembrane, score: 9.96.
 
 0.977
KXA15878.1
KEGG: gvg:HMPREF0421_20178 0. ABC transporter ATP-binding protein K02031:K02034; Psort location: CytoplasmicMembrane, score: 10.00.
  
 
 0.891
KXA15830.1
KEGG: bde:BDP_0387 4.3e-128 pstS; phosphate-binding protein K02040.
  
 
 0.810
AspS
aspartate--tRNA ligase; KEGG: gvg:HMPREF0421_20832 0. aspS; aspartate--tRNA ligase K01876; Psort location: Cytoplasmic, score: 10.00.
     
 0.771
KXA17457.1
ABC transporter, substrate-binding protein, family 5; KEGG: dhd:Dhaf_0453 6.1e-18 4-phytase K02035; Psort location: Cellwall, score: 9.21.
  
 
 0.766
KXA15338.1
KEGG: bde:BDP_1338 1.5e-166 ABC transporter ATP-binding protein K02006; Psort location: CytoplasmicMembrane, score: 10.00.
    
 0.765
KXA17417.1
KEGG: gvg:HMPREF0421_20925 2.2e-133 ABC transporter ATP-binding protein; Psort location: CytoplasmicMembrane, score: 9.96.
 
 0.758
KXA15307.1
histidine--tRNA ligase; KEGG: gvg:HMPREF0421_20833 1.3e-229 hisS; histidine--tRNA ligase K01892; Psort location: Cytoplasmic, score: 10.00.
     
 0.743
Your Current Organism:
Gardnerella vaginalis
NCBI taxonomy Id: 2702
Other names: ATCC 14018, CCUG 3717, CIP 70.74, Corynebacterium vaginale, DSM 4944, G. vaginalis, Haemophilus hemolyticus vaginalis, Haemophilus vaginalis, JCM 11026, LMG 7832, LMG:7832, NCTC 10287, NCTC 10915, strain 594
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