STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KXA15328.1Hypothetical protein; Psort location: Cytoplasmic, score: 7.50. (642 aa)    
Predicted Functional Partners:
KXA15325.1
Hypothetical protein; Psort location: Cytoplasmic, score: 7.50.
   
 
 0.933
KXA15327.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 9.55.
       0.927
KXA15326.1
DEAD/DEAH box helicase; KEGG: gvg:HMPREF0421_20822 0. helicase; K03727 ATP-dependent RNA helicase HelY; Psort location: Cytoplasmic, score: 7.50.
       0.856
KXA15329.1
KEGG: gvh:HMPREF9231_0746 2.1e-229 UTP--glucose-1-phosphate uridylyltransferase; K00963 UTP--glucose-1-phosphate uridylyltransferase; Psort location: Cytoplasmic, score: 7.50.
       0.817
KXA15324.1
KEGG: gvh:HMPREF9231_0751 1.5e-102 haloacid dehalogenase-like hydrolase; K01091 phosphoglycolate phosphatase.
       0.698
rpoZ
KEGG: gvg:HMPREF0421_20761 2.2e-46 rpoZ; DNA-directed RNA polymerase subunit omega K03060.
   
   0.666
RpoD
RNA polymerase sigma factor RpoD; KEGG: lru:HMPREF0538_21998 4.6e-92 rpoD; DNA-directed RNA polymerase sigma subunit RpoD K03086; Psort location: Cytoplasmic, score: 9.97.
   
 
 0.663
KXA17057.1
KEGG: gvh:HMPREF9231_0973 3.1e-276 GMP synthase; K01951 GMP synthase (glutamine-hydrolysing); Psort location: Cytoplasmic, score: 7.50.
     
 0.659
RpoB
KEGG: gvg:HMPREF0421_21209 0. rpoB; DNA-directed RNA polymerase subunit beta K03043; Psort location: Cytoplasmic, score: 9.97.
   
 
 0.656
RpoA
KEGG: gvh:HMPREF9231_0263 6.9e-169 rpoA; DNA-directed RNA polymerase subunit alpha K03040; Psort location: Cytoplasmic, score: 9.97.
   
   0.649
Your Current Organism:
Gardnerella vaginalis
NCBI taxonomy Id: 2702
Other names: ATCC 14018, CCUG 3717, CIP 70.74, Corynebacterium vaginale, DSM 4944, G. vaginalis, Haemophilus hemolyticus vaginalis, Haemophilus vaginalis, JCM 11026, LMG 7832, LMG:7832, NCTC 10287, NCTC 10915, strain 594
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