STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KXA15146.1DNA-binding regulatory protein, YebC/PmpR family; KEGG: rdn:HMPREF0733_12022 1.1e-65 glucose-1-phosphate adenylyltransferase; Psort location: Cytoplasmic, score: 7.50. (252 aa)    
Predicted Functional Partners:
KXA15145.1
KEGG: gvh:HMPREF9231_0712 1.7e-87 ruvC; crossover junction endodeoxyribonuclease RuvC K01159; Psort location: Cytoplasmic, score: 9.97.
  
  
 0.946
KXA15144.1
Holliday junction DNA helicase RuvA; KEGG: gvg:HMPREF0421_20857 2.1e-80 ruvA; crossover junction ATP-dependent DNA helicase RuvA K03550; Psort location: Cytoplasmic, score: 9.67.
 
  
 0.899
KXA17604.1
tyrosine--tRNA ligase; KEGG: gvh:HMPREF9231_0961 5.3e-226 tyrS; tyrosine--tRNA ligase K01866; Psort location: Cytoplasmic, score: 9.97.
 
 
 0.882
KXA15143.1
KEGG: gvh:HMPREF9231_0714 3.2e-171 ruvB; Holliday junction DNA helicase RuvB K03551; Psort location: Cytoplasmic, score: 7.50.
     
 0.877
AspS
aspartate--tRNA ligase; KEGG: gvg:HMPREF0421_20832 0. aspS; aspartate--tRNA ligase K01876; Psort location: Cytoplasmic, score: 10.00.
 
  
 0.850
KXA15536.1
NAD+ synthase; KEGG: gvg:HMPREF0421_20632 3.3e-297 nadE; NH(3)-dependent NAD+ synthetase K01950; Psort location: Cytoplasmic, score: 7.50.
   
   0.846
KXA15147.1
KEGG: gvh:HMPREF9231_0710 7.3e-94 CDP-alcohol phosphatidyltransferase; K00995 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; Psort location: CytoplasmicMembrane, score: 10.00.
       0.843
KXA15142.1
Preprotein translocase, YajC subunit.
  
    0.836
KXA16645.1
KEGG: gvh:HMPREF9231_0965 0. pheT; phenylalanine--tRNA ligase, beta subunit K01890; Psort location: Cytoplasmic, score: 9.97.
  
 
 0.800
KXA15141.1
KEGG: gvg:HMPREF0421_20854 8.0e-88 apt; adenine phosphoribosyltransferase K00759; Psort location: Cytoplasmic, score: 9.97.
  
    0.787
Your Current Organism:
Gardnerella vaginalis
NCBI taxonomy Id: 2702
Other names: ATCC 14018, CCUG 3717, CIP 70.74, Corynebacterium vaginale, DSM 4944, G. vaginalis, Haemophilus hemolyticus vaginalis, Haemophilus vaginalis, JCM 11026, LMG 7832, LMG:7832, NCTC 10287, NCTC 10915, strain 594
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