STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KXA15215.1KEGG: gvh:HMPREF9231_0652 1.0e-158 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1; K06215 pyridoxine biosynthesis protein; Psort location: Cytoplasmic, score: 7.50. (311 aa)    
Predicted Functional Partners:
KXA15216.1
KEGG: gvh:HMPREF9231_0651 9.4e-78 pdxT; pyridoxal 5'-phosphate synthase, glutaminase subunit Pdx2 K08681; Psort location: Cytoplasmic, score: 7.50.
 0.999
Gap
KEGG: gvg:HMPREF0421_21168 2.0e-185 gap; glyceraldehyde-3-phosphate dehydrogenase (phosphorylating) K00134; Psort location: Cytoplasmic, score: 9.97.
 
  
 0.872
Tal
Transaldolase; KEGG: gvg:HMPREF0421_20790 4.6e-188 tal; transaldolase K00616; Psort location: Cytoplasmic, score: 7.50.
    
 0.871
Tkt
Transketolase; KEGG: gvg:HMPREF0421_20791 0. tkt; transketolase K00615; Psort location: Cytoplasmic, score: 7.50.
   
 
 0.827
Prs
KEGG: gvh:HMPREF9231_0708 4.8e-177 prs_2; ribose-phosphate diphosphokinase K00948; Psort location: Cytoplasmic, score: 9.97.
  
 
 0.820
RpiA
KEGG: gvh:HMPREF9231_1170 1.5e-118 rpiA; ribose 5-phosphate isomerase A K01807; Psort location: Cytoplasmic, score: 7.50.
    
  0.812
Pgm
KEGG: gva:HMPREF0424_0298 3.9e-301 pgm; phosphoglucomutase, alpha-D-glucose phosphate-specific K01835; Psort location: Cytoplasmic, score: 7.50.
     
  0.800
KXA15146.1
DNA-binding regulatory protein, YebC/PmpR family; KEGG: rdn:HMPREF0733_12022 1.1e-65 glucose-1-phosphate adenylyltransferase; Psort location: Cytoplasmic, score: 7.50.
     
 0.768
GuaB
KEGG: gvh:HMPREF9231_0628 3.5e-268 guaB; inosine-5'-monophosphate dehydrogenase K00088; Psort location: Cytoplasmic, score: 7.50.
     
 0.684
ThrS
threonine--tRNA ligase; KEGG: gvg:HMPREF0421_20690 0. thrS; threonine--tRNA ligase K01868; Psort location: Cytoplasmic, score: 10.00.
  
  
 0.665
Your Current Organism:
Gardnerella vaginalis
NCBI taxonomy Id: 2702
Other names: ATCC 14018, CCUG 3717, CIP 70.74, Corynebacterium vaginale, DSM 4944, G. vaginalis, Haemophilus hemolyticus vaginalis, Haemophilus vaginalis, JCM 11026, LMG 7832, LMG:7832, NCTC 10287, NCTC 10915, strain 594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.