STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pleDResponse regulator containing a CheY-like receiver domain and a GGDEF domain; 122d0030; Derived by automated computational analysis using gene prediction method: Protein Homology. Start codon location was manually corrected by using GenomeMatcher. (513 aa)    
Predicted Functional Partners:
rtn-3
Hypothetical protein; 352c0009; Derived by automated computational analysis using Genaris Flexible Annotator; EAL domain.
 
  
 0.812
rtn
Diguanylate phosphodiesterase; 291c0013; Derived by automated computational analysis using gene prediction method: Protein Homology. Start codon location was manually corrected by using GenomeMatcher.
  
 0.799
rtn-2
EAL domain; 20d0030; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.698
baeS-23
ATPase; 147c0001; Derived by automated computational analysis using gene prediction method: Protein Homology. Start codon location was manually corrected by using GenomeMatcher.
 
 0.670
BAQ46243.1
Response regulator containing a CheY-like receiver domain and an HD-GYP domain; 108d0011; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.633
BAQ45052.1
Phosphohydrolase; 214d0003; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.628
BAQ45702.1
Metal dependent phosphohydrolase; 210d0004; CDS was addded manually by using GenomeMatcher.
 
 0.596
BAQ44186.1
126c0018; CDS was addded manually by using GenomeMatcher.
 
 
0.586
BAQ45467.1
Metal-dependent phosphohydrolase; 102d0004; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.582
atoS-9
Diguanylate cyclase; 169d0013; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
0.556
Your Current Organism:
Methylobacterium aquaticum
NCBI taxonomy Id: 270351
Other names: CCM 7218, CECT 5998, CIP 108333, DSM 16371, M. aquaticum, Methylobacterium aquaticum Gallego et al. 2005, strain GR16
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.