STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
livMABC transporter permease; 291c0004; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family. (357 aa)    
Predicted Functional Partners:
livH
ABC transporter permease; 291c0005; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family.
 
 0.996
livG
ABC transporter; 291c0007; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.966
faa1
AMP-dependent synthetase; 291c0006; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.927
livK-3
Branched-chain amino acid ABC transporter substrate-binding protein; 291c0003; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.909
livF
Branched-chain amino acid ABC transporter ATP-binding protein; 291c0002; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.894
livG-11
ABC transporter; 51c0025; Derived by automated computational analysis using gene prediction method: Protein Homology. Start codon location was manually corrected by using GenomeMatcher.
  
 0.874
livH-10
ABC transporter permease; 116d0013; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family.
  
 0.867
livG-4
Leucine/isoleucine/valine transporter ATP-binding subunit; 285d0036; Part of the ABC transporter complexes LivFGHMJ and LivFGHMK involved in the high-affinity transport of branched-chain amino acids; LivFGHMK is specific for the transport of leucine, while LivFGHMJ is a transporter for leucine, isoleucine, and valine; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.846
livF-12
Branched-chain amino acid ABC transporter ATP-binding protein; 51c0021; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.830
livH-14
ABC transporter permease; 346c0005; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family.
  
 0.824
Your Current Organism:
Methylobacterium aquaticum
NCBI taxonomy Id: 270351
Other names: CCM 7218, CECT 5998, CIP 108333, DSM 16371, M. aquaticum, Methylobacterium aquaticum Gallego et al. 2005, strain GR16
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.