STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BAQ43818.1phenylacetate-CoA oxygenase; 451c0021; Derived by automated computational analysis using gene prediction method: Protein Homology. (333 aa)    
Predicted Functional Partners:
BAQ43819.1
phenylacetate-CoA oxygenase; 451c0020; with PaaBCDE catalyzes the hydroxylation of phenylacetyl-CoA; involved in phenylacetate degradation; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.999
BAQ43820.1
Phenylacetic acid degradation protein; 451c0019; Derived by automated computational analysis using gene prediction method: Protein Homology. Start codon location was manually corrected by using GenomeMatcher.
 0.999
paaD
phenylacetate-CoA oxygenase; 451c0018; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.998
hmp
Phenylacetic acid degradation protein; 451c0017; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.994
paaK
AMP-dependent synthetase; 291c0008; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.949
paaX
Phenylacetic acid-responsive transcriptional repressor; 451c0022; Derived by automated computational analysis using Genaris Flexible Annotator.
 
  
 0.900
caiD-7
enoyl-CoA hydratase; 362c0005; Derived by automated computational analysis using gene prediction method: Protein Homology. Start codon location was manually corrected by using GenomeMatcher; Belongs to the enoyl-CoA hydratase/isomerase family.
 
  
 0.893
fadB-5
3-hydroxybutyryl-CoA dehydrogenase; 81c0003; converts (S)-3-hydroxybutanoyl-CoA to 3-acetoacetyl-CoA; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.699
hmp-5
Ferredoxin; 169c0003; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.670
paaD-2
FeS assembly SUF system protein; 39c0003; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.461
Your Current Organism:
Methylobacterium aquaticum
NCBI taxonomy Id: 270351
Other names: CCM 7218, CECT 5998, CIP 108333, DSM 16371, M. aquaticum, Methylobacterium aquaticum Gallego et al. 2005, strain GR16
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.