STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BAQ43885.1Short-chain dehydrogenase/reductase SDR; 29d0007; CDS was addded manually by using GenomeMatcher. (305 aa)    
Predicted Functional Partners:
BAQ45533.1
Transporter; 265c0001; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.654
BAQ44531.1
Beta-ketoacyl synthase; 443c0012; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.612
fabG-3
3-oxoacyl-ACP reductase; 291d0036; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.485
zwf
Glucose-6-phosphate dehydrogenase; Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone.
  
  
 0.468
aslA
Twin-arginine translocation pathway signal protein; 188d0007; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.465
BAQ46948.1
Hypothetical protein; 65d0004; CDS was addded manually by using GenomeMatcher.
   
 
 0.465
fabD
ACP S-malonyltransferase; 232c0005; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.446
mipB
Transaldolase; Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway; Belongs to the GPI family.
  
  
 0.440
BAQ43884.1
Predicted membrane protein; 29d0006; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.430
fruK
1-phosphofructokinase; 98c0008; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the carbohydrate kinase PfkB family.
   
  
 0.428
Your Current Organism:
Methylobacterium aquaticum
NCBI taxonomy Id: 270351
Other names: CCM 7218, CECT 5998, CIP 108333, DSM 16371, M. aquaticum, Methylobacterium aquaticum Gallego et al. 2005, strain GR16
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.