STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lysR-5LysR family transcriptional regulator; 29c0018; charges one glutamine molecule and pairs it to its corresponding RNA trinucleotide during protein translation; Derived by automated computational analysis using gene prediction method: Protein Homology. Start codon location was manually corrected by using GenomeMatcher; Belongs to the LysR transcriptional regulatory family. (296 aa)    
Predicted Functional Partners:
lysR-17
Transcriptional regulator, LysR family; 20c0058; CDS was addded manually by using GenomeMatcher; Belongs to the LysR transcriptional regulatory family.
  
     0.679
lysR-12
Transcriptional regulator, LysR family; 214c0022; CDS was addded manually by using GenomeMatcher; Belongs to the LysR transcriptional regulatory family.
  
     0.657
lysR-8
LysR family transcriptional regulator; 277d0006; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the LysR transcriptional regulatory family.
  
     0.631
lysR-7
LysR family transcriptional regulator; 98c0010; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the LysR transcriptional regulatory family.
  
     0.627
lysR-14
LysR family transcriptional regulator; 158d0015; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the LysR transcriptional regulatory family.
  
     0.604
trxB
Thioredoxin reductase; 29c0019; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.589
lysR-13
Transcriptional regulator, LysR family; 286d0009; CDS was addded manually by using GenomeMatcher; Belongs to the LysR transcriptional regulatory family.
  
     0.583
lysR-24
Transcriptional regulator, LysR family; 83c0001; CDS was addded manually by using GenomeMatcher; Belongs to the LysR transcriptional regulatory family.
  
     0.583
lysR-2
LysR family transcriptional regulator; 121c0016; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the LysR transcriptional regulatory family.
  
     0.566
cumB
dCMP deaminase; 29c0017; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.533
Your Current Organism:
Methylobacterium aquaticum
NCBI taxonomy Id: 270351
Other names: CCM 7218, CECT 5998, CIP 108333, DSM 16371, M. aquaticum, Methylobacterium aquaticum Gallego et al. 2005, strain GR16
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.