STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BAQ43968.1Hypothetical protein; 293d0034; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (422 aa)    
Predicted Functional Partners:
BAQ43969.1
Hypothetical protein; 293d0032; Derived by automated computational analysis using gene prediction method: Protein Homology. Start codon location was manually corrected by using GenomeMatcher.
       0.785
BAR47064.1
Hypothetical protein; 293d0033; Derived by automated computational analysis using Genaris Flexible Annotator.
       0.773
BAQ43967.1
Hypothetical protein; 293d0035; CDS was addded manually by using GenomeMatcher.
       0.761
BAQ43973.1
Hypothetical protein; 293d0028; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
   0.759
BAQ43966.1
Hypothetical protein; CDS was addded manually by using GenomeMatcher.
       0.757
BAQ44390.1
Collagen triple helix repeat protein; 11d0030; CDS was addded manually by using GenomeMatcher.
    
 
 0.676
BAQ44417.1
tRNA (1-methyladenosine) methyltransferase or collagen triple helix repeat; 11c0052; Derived by automated computational analysis using gene prediction method: Protein Homology. Start codon location was manually corrected by using GenomeMatcher.
    
 
 0.676
BAQ46583.1
RTX toxins and related Ca2+-binding proteins; 56c0001; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 
 0.676
BAQ46584.1
RTX toxins and related Ca2+-binding proteins; 56c0001; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 
 0.676
BAQ47214.1
Chemotaxis protein MotC; 321d0001; Derived by automated computational analysis using gene prediction method: Protein Homology. Start codon location was manually corrected by using GenomeMatcher.
    
 
 0.676
Your Current Organism:
Methylobacterium aquaticum
NCBI taxonomy Id: 270351
Other names: CCM 7218, CECT 5998, CIP 108333, DSM 16371, M. aquaticum, Methylobacterium aquaticum Gallego et al. 2005, strain GR16
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.