STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
phnICarbon-phosphorus lyase complex subunit PhnI; 131c0007; required for the use of phosphonate and phosphite; Derived by automated computational analysis using gene prediction method: Protein Homology. (368 aa)    
Predicted Functional Partners:
phnG
Phosphonate C-P lyase; 131c0009; Derived by automated computational analysis using gene prediction method: Protein Homology. Start codon location was manually corrected by using GenomeMatcher.
 
 0.999
phnH
Protein phnH; 131c0008; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.999
phnL
Phosphonate ABC transporter ATPase; 131c0003; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.999
phnJ
Carbon-phosphorus lyase; Catalyzes the breakage of the C-P bond in alpha-D-ribose 1- methylphosphonate 5-phosphate (PRPn) forming alpha-D-ribose. Belongs to the PhnJ family.
 
 
 0.998
phnK
Phosphonate C-P lyase system protein PhnK; 131c0004; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.998
BAQ44662.1
Phosphonate metabolism protein PhnM; 131c0002; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.996
phnF-2
Transcriptional regulator; 131d0001; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.977
BAQ44663.1
Ribose-phosphate pyrophosphokinase; 131c0001; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.948
phnD
Phosphonate ABC transporter substrate-binding protein; 302c0009; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.933
phnC
Phosphonate ABC transporter ATP-binding protein; Part of the ABC transporter complex PhnCDE involved in phosphonates import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Phosphonates importer (TC 3.A.1.9.1) family.
 
  
 0.932
Your Current Organism:
Methylobacterium aquaticum
NCBI taxonomy Id: 270351
Other names: CCM 7218, CECT 5998, CIP 108333, DSM 16371, M. aquaticum, Methylobacterium aquaticum Gallego et al. 2005, strain GR16
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