STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
crp-3Crp/Fnr family transcriptional regulator; 19d0001; Derived by automated computational analysis using gene prediction method: Protein Homology. (269 aa)    
Predicted Functional Partners:
BAQ44700.1
Signal transduction histidine kinase; 19d0002; CDS was addded manually by using GenomeMatcher.
   
 
 0.797
cheY-7
CheY-like receiver; 19d0003; Derived by automated computational analysis using gene prediction method: GeneMarkS+. Start codon location was manually corrected by using GenomeMatcher.
   
   0.788
BAQ46116.1
352c0002; CDS was addded manually by using GenomeMatcher.
  
     0.659
baeS-8
Histidine kinase; 19d0004; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.617
BAQ45877.1
Adenylate cyclase, family 3; CDS was addded manually by using GenomeMatcher; some proteins contain HAMP domain.
 
 
 0.507
rpoB
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.490
baeS-7
Histidine kinase; 19d0005; Derived by automated computational analysis using gene prediction method: Protein Homology. Start codon location was manually corrected by using GenomeMatcher.
   
 
 0.486
wcaA-3
Glycosyl transferase family 2; 35d0012; CDS was addded manually by using GenomeMatcher.
  
 
 0.483
rpoA
DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
   0.471
BAQ43616.1
XRE family transcriptional regulator; 121d0006; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.440
Your Current Organism:
Methylobacterium aquaticum
NCBI taxonomy Id: 270351
Other names: CCM 7218, CECT 5998, CIP 108333, DSM 16371, M. aquaticum, Methylobacterium aquaticum Gallego et al. 2005, strain GR16
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.