STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BAQ45008.1Class III aminotransferase; 139d0023; Derived by automated computational analysis using gene prediction method: Protein Homology. (277 aa)    
Predicted Functional Partners:
BAQ43662.1
3-keto-5-aminohexanoate cleavage protein; 122d0011; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
  0.976
BAQ47473.1
Hypothetical protein; 123d0017; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
  0.973
BAQ44211.1
3-keto-5-aminohexanoate cleavage protein; 126d0010; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 
0.928
BAQ47709.1
Cyclase; 220d0004; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.581
BAQ46549.1
Cupin; 324d0005; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.548
BAQ45007.1
Electron transporter; 139d0022; Derived by automated computational analysis using gene prediction method: Protein Homology. Start codon location was manually corrected by using GenomeMatcher.
       0.498
fadB
3-hydroxyacyl-CoA dehydrogenase; 122d0010; Derived by automated computational analysis using gene prediction method: Protein Homology. Start codon location was manually corrected by using GenomeMatcher.
 
  
 0.494
Your Current Organism:
Methylobacterium aquaticum
NCBI taxonomy Id: 270351
Other names: CCM 7218, CECT 5998, CIP 108333, DSM 16371, M. aquaticum, Methylobacterium aquaticum Gallego et al. 2005, strain GR16
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.