STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hipB-5XRE family transcriptional regulator; 245d0018; Derived by automated computational analysis using gene prediction method: Protein Homology. (206 aa)    
Predicted Functional Partners:
BAQ43554.1
(2Fe-2S)-binding protein; 281d0004; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.651
BAQ45505.1
Hypothetical protein; 421d0004; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.647
BAQ44896.1
Hypothetical protein; 347c0003; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.630
thiD
245d0017; catalyzes the formation hydroxymethylpyrimidine phosphate from hydroxymethylpyrimidine and the formation of of 4-amino-2-methyl-5-diphosphomethylpyrimidine from hydroxymethylpyrimidine phosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.565
BAQ45136.1
Conserved hypothetical protein; 245d0019; CDS was addded manually by using GenomeMatcher.
       0.545
BAQ44199.1
Hypothetical protein; 126d0019; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.528
hipB-8
LacI family transcriptional regulator; 412c0004; Derived by automated computational analysis using gene prediction method: Protein Homology. Start codon location was manually corrected by using GenomeMatcher.
  
     0.528
BAQ45103.1
Chorismate mutase; 79c0001; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.523
hipB-9
DNA-binding protein; 198c0004; Derived by automated computational analysis using gene prediction method: Protein Homology. Start codon location was manually corrected by using GenomeMatcher.
  
     0.514
thiE
Thiamine-phosphate pyrophosphorylase; Condenses 4-methyl-5-(beta-hydroxyethyl)thiazole monophosphate (THZ-P) and 2-methyl-4-amino-5-hydroxymethyl pyrimidine pyrophosphate (HMP-PP) to form thiamine monophosphate (TMP). Belongs to the thiamine-phosphate synthase family.
       0.505
Your Current Organism:
Methylobacterium aquaticum
NCBI taxonomy Id: 270351
Other names: CCM 7218, CECT 5998, CIP 108333, DSM 16371, M. aquaticum, Methylobacterium aquaticum Gallego et al. 2005, strain GR16
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.