STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BAQ45467.1Metal-dependent phosphohydrolase; 102d0004; Derived by automated computational analysis using gene prediction method: Protein Homology. (349 aa)    
Predicted Functional Partners:
BAQ45468.1
Diguanylate cyclase; 102d0005; CDS was addded manually by using GenomeMatcher.
 
 0.905
pleD-5
Response regulator containing a CheY-like receiver domain and a GGDEF domain; 102d0006; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.901
BAQ46399.1
Diguanylate cyclase; 39d0001; Derived by automated computational analysis using gene prediction method: Protein Homology. Start codon location was manually corrected by using GenomeMatcher.
 
 0.770
BAQ45461.1
Diguanylate cyclase/phosphodiesterase; 430d0001; CDS was addded manually by using GenomeMatcher.
 
 
 0.731
BAQ45466.1
Chemotaxis protein CheZ; 102d0003; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.705
pleD-3
Desulfoferrodoxin; 99d0001; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.671
BAQ47139.1
GGDEF domain; 167c0014; Derived by automated computational analysis using gene prediction method: Protein Homology. Start codon location was manually corrected by using GenomeMatcher.
 
 0.650
BAQ46635.1
Hypothetical protein; 77c0001; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.642
BAQ44494.1
Diguanylate cyclase/phosphodiesterase withPAS/PAC sensors; 11d0087; CDS was addded manually by using GenomeMatcher.
   
 0.626
BAQ47166.1
Diguanylate cyclase; 294c0008; CDS was addded manually by using GenomeMatcher.
 
 0.625
Your Current Organism:
Methylobacterium aquaticum
NCBI taxonomy Id: 270351
Other names: CCM 7218, CECT 5998, CIP 108333, DSM 16371, M. aquaticum, Methylobacterium aquaticum Gallego et al. 2005, strain GR16
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.