STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BAQ46168.1Hypothetical protein; 362d0007; CDS was addded manually by using GenomeMatcher. (108 aa)    
Predicted Functional Partners:
cda1-4
Polysaccharide deacetylase; 362d0004; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.591
BAQ46166.1
Hypothetical protein; 362d0005; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.591
BAQ46167.1
Cobalamin synthesis protein P47K; 362d0006; CDS was addded manually by using GenomeMatcher.
       0.591
cynX
MFS transporter; 362d0008; Derived by automated computational analysis using gene prediction method: Protein Homology. Start codon location was manually corrected by using GenomeMatcher.
       0.481
Your Current Organism:
Methylobacterium aquaticum
NCBI taxonomy Id: 270351
Other names: CCM 7218, CECT 5998, CIP 108333, DSM 16371, M. aquaticum, Methylobacterium aquaticum Gallego et al. 2005, strain GR16
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.