STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
celDCellulose biosynthesis protein; 116c0004; Catalyzes the hydrolysis of AMP to form adenine and ribose 5-phosphate using water as the nucleophile; Derived by automated computational analysis using gene prediction method: Protein Homology. Start codon location was manually corrected by using GenomeMatcher. (392 aa)    
Predicted Functional Partners:
rfbX
Polysaccharide biosynthesis protein; 116c0005; Derived by automated computational analysis using gene prediction method: Protein Homology.
    0.886
BAQ45270.1
acyl-CoA acyltransferase; 261c0002; Derived by automated computational analysis using gene prediction method: Protein Homology. Start codon location was manually corrected by using GenomeMatcher.
  
     0.681
BAQ44997.1
Hypothetical protein; 139c0009; Derived by automated computational analysis using gene prediction method: Protein Homology. Start codon location was manually corrected by using GenomeMatcher.
  
     0.677
BAQ45477.1
Hypothetical protein; 102d0011; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.671
cda1-3
Polysaccharide deacetylase; 261d0003; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.664
BAQ46770.1
acyl-CoA synthetase; 83c0008; Derived by automated computational analysis using gene prediction method: Protein Homology. Start codon location was manually corrected by using GenomeMatcher.
  
     0.649
BAQ43594.1
Polymerase; 403d0001; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.644
BAQ44750.1
Porin; 276d0006; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.635
BAQ47235.1
Hypothetical protein; 54c0003; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.603
BAQ48068.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.567
Your Current Organism:
Methylobacterium aquaticum
NCBI taxonomy Id: 270351
Other names: CCM 7218, CECT 5998, CIP 108333, DSM 16371, M. aquaticum, Methylobacterium aquaticum Gallego et al. 2005, strain GR16
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.