STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ampCBeta-lactamase; 180d0002; Derived by automated computational analysis using gene prediction method: Protein Homology. Start codon location was manually corrected by using GenomeMatcher. (406 aa)    
Predicted Functional Partners:
wecD-7
Histone acetyltransferase HPA2 and related acetyltransferases; 180d0001; CDS was addded manually by using GenomeMatcher.
       0.777
marR-8
Transcriptional regulator; 180c0002; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.587
BAQ46503.1
Hypothetical protein; 180c0003; Derived by automated computational analysis using gene prediction method: Protein Homology. Start codon location was manually corrected by using GenomeMatcher.
       0.572
ipdC
Thiamine pyrophosphate-requiring enzymes; 212c0003; involved in auxin production; thiamine-pyrophosphate requiring enzyme; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   
 0.557
bglX
Beta-hexosaminidase; 245d0002; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.500
uppS
UDP pyrophosphate synthase; Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids.
       0.500
BAQ44531.1
Beta-ketoacyl synthase; 443c0012; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.492
mhpC-4
Predicted hydrolases or acyltransferases; 267d0007; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   
 0.408
BAQ45429.1
Peptidase M19; 152d0008; Derived by automated computational analysis using gene prediction method: Protein Homology. Start codon location was manually corrected by using GenomeMatcher.
 
    0.400
Your Current Organism:
Methylobacterium aquaticum
NCBI taxonomy Id: 270351
Other names: CCM 7218, CECT 5998, CIP 108333, DSM 16371, M. aquaticum, Methylobacterium aquaticum Gallego et al. 2005, strain GR16
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.