STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
oppAABC transporter substrate-binding protein; 91d0001; Derived by automated computational analysis using gene prediction method: Protein Homology. Start codon location was manually corrected by using GenomeMatcher. (534 aa)    
Predicted Functional Partners:
dppB-7
ABC transporter; 91d0002; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.996
dppC-7
Peptide ABC transporter permease; 91d0003; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.996
BAQ46812.1
Microcin ABC transporter ATP-binding protein; 91d0004; with YejAEF is involved in resistance to microcin C; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily.
  
 
 0.980
appF-3
Peptide ABC transporter ATP-binding protein; 76c0002; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily.
 
  
 0.662
dppB-6
Peptide ABC transporter permease; 41d0003; transports peptides consisting of two or three amino acids; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.650
dppC-6
Peptide transporter; 41d0004; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.639
dppB-8
Peptide ABC transporter; 76c0005; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.623
dppC-8
Peptide ABC transporter permease; 76c0004; Derived by automated computational analysis using gene prediction method: Protein Homology. Start codon location was manually corrected by using GenomeMatcher.
  
 0.609
dppB-9
Nickel transporter permease NikB; 220d0017; with NikACDE is involved in nickel transport into the cell; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.593
dppD-2
41d0005; DppD and DppF are the ATP-binding components of the ABC dipeptide transport system DppABCDF; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.587
Your Current Organism:
Methylobacterium aquaticum
NCBI taxonomy Id: 270351
Other names: CCM 7218, CECT 5998, CIP 108333, DSM 16371, M. aquaticum, Methylobacterium aquaticum Gallego et al. 2005, strain GR16
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.