Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
BAQ48116.1 | dnaA-2 | Maq22A_c26225 | Maq22A_c26235 | Signal peptide protein; 18d0001; Derived by automated computational analysis using gene prediction method: Protein Homology. | ATPase; 18d0003; Derived by automated computational analysis using gene prediction method: Protein Homology; involved in DNA replication initiation. | 0.420 |
BAQ48116.1 | perM-6 | Maq22A_c26225 | Maq22A_c26230 | Signal peptide protein; 18d0001; Derived by automated computational analysis using gene prediction method: Protein Homology. | Membrane protein; 18d0002; Derived by automated computational analysis using gene prediction method: Protein Homology. Start codon location was manually corrected by using GenomeMatcher. | 0.459 |
dnaA-2 | BAQ48116.1 | Maq22A_c26235 | Maq22A_c26225 | ATPase; 18d0003; Derived by automated computational analysis using gene prediction method: Protein Homology; involved in DNA replication initiation. | Signal peptide protein; 18d0001; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.420 |
dnaA-2 | perM-6 | Maq22A_c26235 | Maq22A_c26230 | ATPase; 18d0003; Derived by automated computational analysis using gene prediction method: Protein Homology; involved in DNA replication initiation. | Membrane protein; 18d0002; Derived by automated computational analysis using gene prediction method: Protein Homology. Start codon location was manually corrected by using GenomeMatcher. | 0.922 |
perM-6 | BAQ48116.1 | Maq22A_c26230 | Maq22A_c26225 | Membrane protein; 18d0002; Derived by automated computational analysis using gene prediction method: Protein Homology. Start codon location was manually corrected by using GenomeMatcher. | Signal peptide protein; 18d0001; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.459 |
perM-6 | dnaA-2 | Maq22A_c26230 | Maq22A_c26235 | Membrane protein; 18d0002; Derived by automated computational analysis using gene prediction method: Protein Homology. Start codon location was manually corrected by using GenomeMatcher. | ATPase; 18d0003; Derived by automated computational analysis using gene prediction method: Protein Homology; involved in DNA replication initiation. | 0.922 |