STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
glpC-2(Fe-S)-binding protein; 169c0001; Derived by automated computational analysis using gene prediction method: Protein Homology. (632 aa)    
Predicted Functional Partners:
fixA-2
Electron transfer flavoprotein subunit beta; 145d0002; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.982
fixB-2
Electron transfer flavoprotein subunit alpha; 145d0001; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.965
hmp-5
Ferredoxin; 169c0003; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.953
hcaE-3
(Fe-S)-binding protein; 169c0004; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.950
nemA-6
N-methylproline demethylase; 169c0002; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.930
BAQ48180.1
DNA-binding protein; 145d0003; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.806
hmp
Phenylacetic acid degradation protein; 451c0017; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.776
gcvT-2
Sarcosine oxidase subunit alpha; 145d0006; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.676
hcaD-4
Sarcosine oxidase subunit alpha; 347d0022; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.627
lldP
Lactate permease; Transports L-lactate across the membrane. Can also transport D-lactate and glycolate; Belongs to the lactate permease family.
 
  
 0.621
Your Current Organism:
Methylobacterium aquaticum
NCBI taxonomy Id: 270351
Other names: CCM 7218, CECT 5998, CIP 108333, DSM 16371, M. aquaticum, Methylobacterium aquaticum Gallego et al. 2005, strain GR16
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.