STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gumC-3Uncharacterized protein; 96d0007; Derived by automated computational analysis using Genaris Flexible Annotator; involved in exopolysaccharide biosynthesis. (452 aa)    
Predicted Functional Partners:
wza-2
Polysaccharide export protein; 96d0010; CDS was addded manually by using GenomeMatcher.
 
 
 0.994
wza
Sugar transporter; 466c0001; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.983
wcaJ-2
Sugar transferases; 96d0005; Derived by automated computational analysis using Genaris Flexible Annotator; involved in lipopolysaccharide synthesis.
  
  
 0.937
wbbJ
Acetyltransferase; 139d0017; Derived by automated computational analysis using gene prediction method: Protein Homology. Start codon location was manually corrected by using GenomeMatcher.
  
  
 0.927
wcaJ
Exopolysaccharide biosynthesis polyprenylglycosylphosphotransferase; 205c0009; Derived by automated computational analysis using gene prediction method: Protein Homology. Start codon location was manually corrected by using GenomeMatcher.
 
  
 0.898
wcaA-7
Glycosyl hydrolase; 96d0006; Derived by automated computational analysis using gene prediction method: Protein Homology. Start codon location was manually corrected by using GenomeMatcher.
  
  
 0.782
nuoI
NADH dehydrogenase; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient.
  
 
 0.753
rfbX
Polysaccharide biosynthesis protein; 116c0005; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.716
wzb
ArsC family transcriptional regulator; 121c0012; Derived by automated computational analysis using gene prediction method: Protein Homology. Start codon location was manually corrected by using GenomeMatcher; Belongs to the low molecular weight phosphotyrosine protein phosphatase family.
  
 
 0.686
nuoC
NADH dehydrogenase; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I 30 kDa subunit family.
     
 0.677
Your Current Organism:
Methylobacterium aquaticum
NCBI taxonomy Id: 270351
Other names: CCM 7218, CECT 5998, CIP 108333, DSM 16371, M. aquaticum, Methylobacterium aquaticum Gallego et al. 2005, strain GR16
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