STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CHK_0002Vancomycin B-type resistance protein VanW. (631 aa)    
Predicted Functional Partners:
CHK_0001
Vancomycin B-type resistance protein VanW.
 
    
0.586
CHK_0003
UPF0047 protein Bsu YugU.
       0.566
rex
Redox-sensitive transcriptional regulator (AT-rich DNA-binding protein); Modulates transcription in response to changes in cellular NADH/NAD(+) redox state.
       0.552
CHK_0247
Hypothetical protein.
  
     0.548
CHK_1431
Stage V sporulation protein B.
  
     0.456
CHK_0005
TPR domain protein in aerotolerance operon.
 
     0.435
CHK_1697
Putative secreted protein associated with spyDAC.
  
     0.414
Your Current Organism:
Catabacter hongkongensis
NCBI taxonomy Id: 270498
Other names: C. hongkongensis, CCUG 54229, Catabacter hongkongensis Lau et al. 2014, JCM 17853, strain HKU16
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.