Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
CHK_0342 | CHK_0343 | CHK_0342 | CHK_0343 | tRNA (adenine37-N(6))-methyltransferase TrmN6; Belongs to the methyltransferase superfamily. | Ferredoxin; Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions. | 0.704 |
CHK_0342 | CHK_0344 | CHK_0342 | CHK_0344 | tRNA (adenine37-N(6))-methyltransferase TrmN6; Belongs to the methyltransferase superfamily. | Signal peptidase-like protein. | 0.692 |
CHK_0342 | CHK_0345 | CHK_0342 | CHK_0345 | tRNA (adenine37-N(6))-methyltransferase TrmN6; Belongs to the methyltransferase superfamily. | DNA polymerase III delta prime subunit. | 0.661 |
CHK_0342 | CHK_0347 | CHK_0342 | CHK_0347 | tRNA (adenine37-N(6))-methyltransferase TrmN6; Belongs to the methyltransferase superfamily. | Lysine decarboxylase. | 0.628 |
CHK_0342 | CHK_1827 | CHK_0342 | CHK_1827 | tRNA (adenine37-N(6))-methyltransferase TrmN6; Belongs to the methyltransferase superfamily. | Endonuclease. | 0.632 |
CHK_0342 | metG | CHK_0342 | CHK_0338 | tRNA (adenine37-N(6))-methyltransferase TrmN6; Belongs to the methyltransferase superfamily. | Methionyl-tRNA synthetase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation. | 0.569 |
CHK_0342 | rsmI | CHK_0342 | CHK_0341 | tRNA (adenine37-N(6))-methyltransferase TrmN6; Belongs to the methyltransferase superfamily. | rRNA small subunit methyltransferase I; Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA. | 0.975 |
CHK_0342 | tmk | CHK_0342 | CHK_0346 | tRNA (adenine37-N(6))-methyltransferase TrmN6; Belongs to the methyltransferase superfamily. | Thymidylate kinase; Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis; Belongs to the thymidylate kinase family. | 0.811 |
CHK_0343 | CHK_0342 | CHK_0343 | CHK_0342 | Ferredoxin; Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions. | tRNA (adenine37-N(6))-methyltransferase TrmN6; Belongs to the methyltransferase superfamily. | 0.704 |
CHK_0343 | CHK_0344 | CHK_0343 | CHK_0344 | Ferredoxin; Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions. | Signal peptidase-like protein. | 0.711 |
CHK_0343 | CHK_0345 | CHK_0343 | CHK_0345 | Ferredoxin; Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions. | DNA polymerase III delta prime subunit. | 0.741 |
CHK_0343 | CHK_0347 | CHK_0343 | CHK_0347 | Ferredoxin; Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions. | Lysine decarboxylase. | 0.647 |
CHK_0343 | rsmI | CHK_0343 | CHK_0341 | Ferredoxin; Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions. | rRNA small subunit methyltransferase I; Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA. | 0.695 |
CHK_0343 | tmk | CHK_0343 | CHK_0346 | Ferredoxin; Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions. | Thymidylate kinase; Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis; Belongs to the thymidylate kinase family. | 0.715 |
CHK_0344 | CHK_0342 | CHK_0344 | CHK_0342 | Signal peptidase-like protein. | tRNA (adenine37-N(6))-methyltransferase TrmN6; Belongs to the methyltransferase superfamily. | 0.692 |
CHK_0344 | CHK_0343 | CHK_0344 | CHK_0343 | Signal peptidase-like protein. | Ferredoxin; Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions. | 0.711 |
CHK_0344 | CHK_0345 | CHK_0344 | CHK_0345 | Signal peptidase-like protein. | DNA polymerase III delta prime subunit. | 0.926 |
CHK_0344 | CHK_0347 | CHK_0344 | CHK_0347 | Signal peptidase-like protein. | Lysine decarboxylase. | 0.793 |
CHK_0344 | metG | CHK_0344 | CHK_0338 | Signal peptidase-like protein. | Methionyl-tRNA synthetase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation. | 0.781 |
CHK_0344 | rsmI | CHK_0344 | CHK_0341 | Signal peptidase-like protein. | rRNA small subunit methyltransferase I; Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA. | 0.778 |
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