STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CHK_0368Putative transcriptional regulator of N-Acetylglucosamine utilization, GntR family. (240 aa)    
Predicted Functional Partners:
CHK_1308
Pyruvate-flavodoxin oxidoreductase.
    
  0.819
CHK_2747
Transcriptional regulator, GntR family.
  
  
 0.742
CHK_2247
Ribose 5-phosphate isomerase B.
  
 
  0.710
guaA
GMP synthase; Catalyzes the synthesis of GMP from XMP.
     
 0.610
CHK_1862
Transcriptional regulator, AraC family.
  
  
 0.589
CHK_2260
Transcriptional regulator, AraC family.
  
  
 0.589
CHK_2271
Two-component response regulator yesN.
  
  
 0.589
CHK_3160
DNA-binding response regulator, AraC family.
  
  
 0.589
CHK_1351
Transcriptional regulator, Hth-3 family.
  
  
 0.559
CHK_2994
N-acetylglucosamine-6-phosphate deacetylase.
 
  
 0.543
Your Current Organism:
Catabacter hongkongensis
NCBI taxonomy Id: 270498
Other names: C. hongkongensis, CCUG 54229, Catabacter hongkongensis Lau et al. 2014, JCM 17853, strain HKU16
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