STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CHK_0392Glutamate synthase, alpha subunit domain protein. (237 aa)    
Predicted Functional Partners:
CHK_0396
Glutamine amidotransferase, class-II.
  0.999
CHK_0395
Glutamate synthase [NADPH] large chain; Belongs to the glutamate synthase family.
 
  0.995
CHK_0874
Glutamate synthase [NADPH] small chain.
 
 0.994
CHK_0394
Nitrite reductase probable electron transfer 4Fe-S subunit.
 
  
  0.974
CHK_0393
Nitrite reductase probable [NAD(P)H] subunit.
 
  
 0.959
CHK_2020
Glutamate synthase [NADPH] large chain; Belongs to the glutamate synthase family.
 
  0.959
CHK_0391
Ethanolamine two-component response regulator.
 
    0.929
CHK_1308
Pyruvate-flavodoxin oxidoreductase.
  
 
 0.923
CHK_1229
NADP-specific glutamate dehydrogenase; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.
  
 0.889
CHK_0399
Ammonium transporter; Belongs to the P(II) protein family.
 
  
 0.881
Your Current Organism:
Catabacter hongkongensis
NCBI taxonomy Id: 270498
Other names: C. hongkongensis, CCUG 54229, Catabacter hongkongensis Lau et al. 2014, JCM 17853, strain HKU16
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