STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CHK_0447L-arabinose isomerase; Catalyzes the conversion of L-arabinose to L-ribulose. (466 aa)    
Predicted Functional Partners:
araB
Ribulokinase.
 
 0.946
araB-2
Ribulokinase.
 
 0.945
CHK_2166
L-ribulose-5-phosphate 4-epimerase.
 
 0.881
CHK_0831
L-ribulose-5-phosphate 4-epimerase.
 
 0.875
CHK_0041
L-ribulose-5-phosphate 4-epimerase.
 
 0.873
CHK_0985
L-ribulose-5-phosphate 4-epimerase.
 
 
 0.750
CHK_0448
Ribose ABC transport system, permease protein RbsC; TCDB 3.A.1.2.1; Belongs to the binding-protein-dependent transport system permease family.
       0.733
CHK_0450
ABC transporter sugar-binding protein.
  
    0.729
rbsA
Ribose ABC transport system, ATP-binding protein RbsA; Part of the ABC transporter complex RbsABC involved in ribose import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Ribose importer (TC 3.A.1.2.1) family.
  
    0.727
CHK_0991
Ribulokinase; Belongs to the FGGY kinase family.
  
 
 0.723
Your Current Organism:
Catabacter hongkongensis
NCBI taxonomy Id: 270498
Other names: C. hongkongensis, CCUG 54229, Catabacter hongkongensis Lau et al. 2014, JCM 17853, strain HKU16
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