STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CHK_0505BchE/P-methylase family protein. (454 aa)    
Predicted Functional Partners:
CHK_0979
Hypothetical protein.
  
 
 0.777
proS
Prolyl-tRNA synthetase, archaeal/eukaryal type; Catalyzes the attachment of proline to tRNA(Pro) in a two- step reaction: proline is first activated by ATP to form Pro-AMP and then transferred to the acceptor end of tRNA(Pro).
       0.581
CHK_1458
Hypothetical protein.
   
    0.540
CHK_0504
Transcriptional regulator, Cro/CI family.
       0.537
CHK_0503
Hypothetical protein.
       0.517
CHK_0507
Putative acetyltransferase.
       0.517
CHK_2468
Cell wall teichoic acid glycosylation protein GtcA.
  
  
  0.480
CHK_1165
Fe-S oxidoreductase.
  
     0.406
Your Current Organism:
Catabacter hongkongensis
NCBI taxonomy Id: 270498
Other names: C. hongkongensis, CCUG 54229, Catabacter hongkongensis Lau et al. 2014, JCM 17853, strain HKU16
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.