STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CHK_0508Diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s). (762 aa)    
Predicted Functional Partners:
CHK_2787
Diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s).
 0.997
CHK_1742
Sensory box/GGDEF family protein.
0.994
CHK_1005
Sensory box/GGDEF family protein.
 
0.991
CHK_1002
Osmosensitive K+ channel histidine kinase KdpD.
 0.988
CHK_1004
Sensory box histidine kinase/response regulator.
 0.987
CHK_0547
Sensory box histidine kinase/response regulator.
 
 0.983
CHK_2670
Sensory box histidine kinase/response regulator.
 0.978
CHK_2585
Diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s).
 
 
0.966
CHK_1681
Sensory box histidine kinase/response regulator.
 
 0.964
CHK_1975
Chemotaxis protein CheV.
  
 
 0.956
Your Current Organism:
Catabacter hongkongensis
NCBI taxonomy Id: 270498
Other names: C. hongkongensis, CCUG 54229, Catabacter hongkongensis Lau et al. 2014, JCM 17853, strain HKU16
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