STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CHK_0621Sorbitol dehydrogenase. (370 aa)    
Predicted Functional Partners:
CHK_1308
Pyruvate-flavodoxin oxidoreductase.
    
 0.839
CHK_0620
Xylulose kinase; Belongs to the FGGY kinase family.
  
 
  0.807
CHK_0622
Dihydrolipoamide dehydrogenase of acetoin dehydrogenase.
       0.664
CHK_0624
Fructose-bisphosphate aldolase class II.
  
 
  0.661
CHK_0623
Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex.
  
    0.647
CHK_0619
Xylose ABC transporter, substrate-binding component.
  
    0.640
CHK_1295
Pyruvate kinase; Belongs to the pyruvate kinase family.
  
 
 0.638
CHK_0626
Acetoin dehydrogenase E1 component alpha-subunit.
  
 
  0.600
CHK_0625
Acetoin dehydrogenase E1 component beta-subunit.
  
 
  0.598
CHK_0809
2,3-butanediol dehydrogenase, R-alcohol forming, (R)- and (S)-acetoin-specific.
  
  
 
0.578
Your Current Organism:
Catabacter hongkongensis
NCBI taxonomy Id: 270498
Other names: C. hongkongensis, CCUG 54229, Catabacter hongkongensis Lau et al. 2014, JCM 17853, strain HKU16
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