STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CHK_0736Stage V sporulation protein B. (539 aa)    
Predicted Functional Partners:
CHK_0735
Nucleoside triphosphate pyrophosphohydrolase MazG.
  
    0.802
CHK_0199
Hypothetical protein; Belongs to the UPF0297 family.
  
     0.734
CHK_1882
RNA polymerase sporulation specific sigma factor SigH; Belongs to the sigma-70 factor family.
  
    0.699
CHK_1071
Putative tRNA-m1A22 methylase.
  
     0.571
CHK_2905
Hypothetical protein.
  
     0.520
CHK_0734
DNA-binding protein HBsu; Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions.
       0.516
whiA
Cytoplasmic hypothetical protein; Involved in cell division and chromosome segregation.
  
     0.513
CHK_2875
Sigma factor RpoE regulatory protein RseC.
  
     0.513
polC
DNA polymerase III alpha subunit; Required for replicative DNA synthesis. This DNA polymerase also exhibits 3' to 5' exonuclease activity.
  
    0.509
CHK_0725
Firmicutes ribosomal L7Ae family protein.
 
    0.507
Your Current Organism:
Catabacter hongkongensis
NCBI taxonomy Id: 270498
Other names: C. hongkongensis, CCUG 54229, Catabacter hongkongensis Lau et al. 2014, JCM 17853, strain HKU16
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