STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CHK_0793Accessory regulator B. (185 aa)    
Predicted Functional Partners:
CHK_0791
Sensor histidine kinase.
 
  
  0.911
CHK_0792
Two-component response regulator.
  
  
 0.794
CHK_2593
Membrane associated histidine kinase-like ATPase.
 
  
  0.749
CHK_0634
Sensor histidine kinase.
 
  
  0.685
CHK_2704
Sensor histidine kinase.
 
  
  0.685
CHK_0973
Sensor histidine kinase.
 
  
  0.619
CHK_2228
Membrane associated histidine kinase-like ATPase.
 
  
  0.585
CHK_1077
Sensor protein of zinc sigma-54-dependent two-component system.
    
 0.575
CHK_0192
Two-component sensor histidine kinase.
 
 
 0.508
CHK_0805
Two-component sensor kinase YesM.
  
 
 0.441
Your Current Organism:
Catabacter hongkongensis
NCBI taxonomy Id: 270498
Other names: C. hongkongensis, CCUG 54229, Catabacter hongkongensis Lau et al. 2014, JCM 17853, strain HKU16
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