Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
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[Homology]
Score
CHK_0807Transketolase, N-terminal section. (285 aa)    
Predicted Functional Partners:
CHK_0808
Transketolase, C-terminal section.
 0.999
CHK_0614
Transketolase, C-terminal section.
 0.997
CHK_2248
Transketolase, C-terminal section.
  
  0.985
CHK_2839
Ribulose-phosphate 3-epimerase; Belongs to the ribulose-phosphate 3-epimerase family.
  
 0.981
CHK_2977
Ribulose-phosphate 3-epimerase.
  
 0.912
CHK_1308
Pyruvate-flavodoxin oxidoreductase.
     
  0.890
CHK_1098
Chorismate mutase I; Prephenate dehydratase.
    
  0.863
CHK_1295
Pyruvate kinase; Belongs to the pyruvate kinase family.
   
 
 0.852
CHK_2247
Ribose 5-phosphate isomerase B.
    
 0.811
rnfB
Electron transport complex protein RnfB; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the 4Fe4S bacterial-type ferredoxin family. RnfB subfamily.
     
  0.761
Your Current Organism:
Catabacter hongkongensis
NCBI taxonomy Id: 270498
Other names: C. hongkongensis, CCUG 54229, Catabacter hongkongensis Lau et al. 2014, JCM 17853, strain HKU16
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