STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CHK_0807Transketolase, N-terminal section. (285 aa)    
Predicted Functional Partners:
CHK_0808
Transketolase, C-terminal section.
 0.999
CHK_0614
Transketolase, C-terminal section.
 0.997
CHK_2248
Transketolase, C-terminal section.
  
  0.986
CHK_2839
Ribulose-phosphate 3-epimerase; Belongs to the ribulose-phosphate 3-epimerase family.
 
 0.984
CHK_2977
Ribulose-phosphate 3-epimerase.
 
 0.925
CHK_1308
Pyruvate-flavodoxin oxidoreductase.
     
 0.883
CHK_1295
Pyruvate kinase; Belongs to the pyruvate kinase family.
   
 
 0.846
CHK_2247
Ribose 5-phosphate isomerase B.
    
 0.812
CHK_0410
Transaldolase.
    
 0.718
CHK_1385
Transketolase; Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate.
 
  
 
0.707
Your Current Organism:
Catabacter hongkongensis
NCBI taxonomy Id: 270498
Other names: C. hongkongensis, CCUG 54229, Catabacter hongkongensis Lau et al. 2014, JCM 17853, strain HKU16
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